FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17892821
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG948440.5300673381799326No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG417250.23319408381719128No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC414380.23159008856121682No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC362490.20258963077985298No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC327040.18277721551006407No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT321930.1799213215177193No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA306460.1712753958696619No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC272940.15254162549326347No Hit
CGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGCTCGCAG229820.12844257481813515No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC222810.12452480243333346No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG208830.1167116129983081No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA204510.11429723686387964No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT203930.11397308451249807No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC198570.11097746967904056No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC187930.10503095068128163No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC185770.10382376261406741No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)