FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17486699
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA698190.39926918167917225No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT624800.35730013995208587No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG403340.23065531121682828No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA337630.19307817902052296No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC334280.19116243723300777No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT318350.18205265613595797No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC301730.17254828941700204No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC295080.16874539900297936No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG255520.14612249001369557No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG253830.14515604117163566No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA250350.14316595716550048No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT212510.1215266529148812No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG199740.11422395959351733No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC197620.11301160956679131No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA196370.11229678054159907No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG189160.10817364672429028No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA178060.10182596498058324No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACA177120.10128841355363867No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT177070.10125982039263098No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT175890.10058502179284953No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)