FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004925509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4864420
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC226000.4645980404652559No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC225350.46326180716303283No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT196510.4039741634151656No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA138760.28525497387149956No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT133790.27503792846834774No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC116930.24037809235222285No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT94120.19348658216190212No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG85830.17644446819970316No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT79750.16394554746506265No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA78870.16213649314820677No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT78280.1609236044584966No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG76950.15818946554779398No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA72790.14963757241356626No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC67660.13909160804371334No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC66110.13590520555379676No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT61390.1262020960361153No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT60080.12350907199625033No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC58310.11987040592711978No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT57250.1176913177727252No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG56130.11538888500581776No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG55830.11477216194325326No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA55730.1145665875890651No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT50940.10471957602345193No Hit
CTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTG49290.10132759917934717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)