FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004925527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20066895
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCC1968177098.08079426338753No Hit
NCGTCC1084920.5406516553756822No Hit
CTGTCC543660.27092382752787614No Hit
CCGTCA273510.13629911353998714No Hit
CCGTTC247950.1235617169472407No Hit
CCGTCT243120.12115476759109968No Hit
TCGTCC239010.11910661813897966No Hit
CCGTAC231380.11530433582275683No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)