FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20465312
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT625560.3056684403345525No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC506080.24728672594876636No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG383870.18757104704780458No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC356160.1740310629029257No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA339110.16569989257920914No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT336470.16440990491618207No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT310560.15174945781427618No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC283090.138326745275127No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA282470.13802379362699185No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG252410.12333552500934264No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG238110.11634809183461263No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG230540.1126491499372206No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC226250.1105529199848016No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC222310.10862771112407178No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG215230.10516819875504464No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA214000.10456718177567974No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT213650.10439616068399055No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC211510.10335048886623374No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT207180.10123471364619312No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)