FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18496231
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAAGACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGC269630.14577564477865787No Hit
GACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGG257250.13908238927163052No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA251030.1357195419975021No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC237600.1284586032689579No Hit
CAGCTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTC234480.12677177312502205No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA226470.12244116112087916No Hit
CACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTG215190.11634262136972662No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT208590.11277432683447779No Hit
CTCAGCTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTT203420.1099791627818662No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC193930.1048483877607281No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT186240.10069078397647607No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)