FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14795943
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA405110.2737980269321124No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC212030.14330279590831083No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC201380.13610487685712228No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC191530.12944764656095253No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA186720.12619675542140166No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG154190.10421099892044731No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG148070.10007472994455303No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)