FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9957730
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC262010.2631222176138538No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT240940.24196277665692884No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC230800.23177973293109977No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT149900.15053631701200976No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG146550.14717209645170135No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA142310.1429140978917886No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC138170.1387565238262134No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA132820.13338381337915367No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC122440.12295975086691444No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA120450.1209613034295969No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC117450.11794856859946995No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT107500.10795633141288226No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG106710.10716297790761549No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA106620.10707259586271167No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT104020.10446155900993498No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT103650.10408998838088601No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT103420.1038590120439096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)