FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20694039
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC310670.15012535735532342No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC304070.1469360331252879No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG303910.14685871617425675No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC281000.13578789524848195No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC256090.12375061243481758No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC249100.1203728281366436No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA248070.11987510026438047No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC220470.10653792621150467No Hit
GTGAAGGACGTCCTTCCCCAGGAGCCGACTGGCCAATCACAGGCAGGAAG216520.10462916398292282No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)