FastQCFastQC Report
Thu 9 May 2024
EGAF00004925635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17954399
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA547820.3051174255401141No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA410350.22855123137232275No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT319350.17786727364140678No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA305510.17015885633375977No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAACTTATCACCT300380.16730161783750042No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG294620.164093490403104No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG214530.11948603793421322No Hit
GTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGC212040.11809919117871893No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA210260.11710779068683948No Hit
GACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCT207060.11532549766773036No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAACTTATCACCTTTCAT196100.10922114407728156No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT193610.10783429732178727No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC191970.10692087214949383No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG182040.10139019412457081No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT179650.10005904402592368No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)