FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16625091
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT754110.4535975171504324No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA611600.36787768560184125No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT534770.3216644047241606No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC471020.28331874995451156No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG397400.2390362855758203No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT386440.23244384045777552No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG375450.22583335032572155No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA344620.20728909092888573No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG342270.20587556483149475No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT314360.18908768679822566No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC303180.1823629115774464No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC293410.17648625201510176No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC289860.1743509253573409No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT284360.17104267278897903No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA272530.1639269222646661No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA240210.14448642717203775No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT222510.13383986890658223No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT220230.13246844784187947No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT220100.13239025278117275No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC215370.12954515557238153No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC208700.12553314745765903No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG208370.1253346523035573No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT204240.12285045537495103No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA203800.12258579516948208No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC202710.12193015966047946No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG200190.12041437848370273No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC191960.1154640296404994No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG169630.10203252421295017No Hit
GAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCG167620.10082350827433065No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)