FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12555818
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC405290.32279059795228No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC390480.3109952692847252No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG365460.29106825218396765No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT332990.2652077307906183No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA322190.2566061406751834No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC251300.20014625888970355No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT244670.19486583829106155No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC243880.19423664790298806No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT242020.19275526293866316No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT240160.19127387797433826No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT200950.16004532719413422No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA199300.15873119537094277No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA199220.15866747988860622No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG187140.1490464420557864No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT163880.13052116556643303No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT162890.12973268647251815No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG160400.1277495420847929No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG159590.12710442282613527No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT151640.12077269676894009No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA151010.12027093734553974No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC149650.11918777414581828No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG146100.11636039961713367No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA137470.10948709196007779No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC133780.10654821533730419No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC132590.10560044753754794No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC127440.1014987633621322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)