FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15526788
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA446700.2876963348762152No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT421490.2714598795320706No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT334740.21558869741765008No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA334410.21537616150874217No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC302330.1947150949700608No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG255070.1642773766216168No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGA253840.16348519732477831No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC223520.1439576556336056No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC207710.1337752534522916No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG206440.1329573122271007No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT196100.12629785374798702No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAG159200.1025324748428329No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)