FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004925850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4909832
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC228420.46522976753583417No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC226310.4609322681509266No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT197090.4014190302234374No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA141260.2877084185365202No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT135850.27668971158279954No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC114810.2338369215077013No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT97600.19878480567155862No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG87070.1773380433383464No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA81130.1652398697144831No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT81070.1651176659405047No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT78550.15998510743341116No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG75430.15363051118653348No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA72770.14821281054015698No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC67840.1381717337782637No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC65230.13285586961020254No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT62420.12713265952888No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT61280.1248107878232901No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA58550.11925051610727211No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC58530.11920978151594597No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG56650.1153807299312889No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG56100.11426052866982006No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT55110.11224416639917618No Hit
CTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTG50800.10346586196839322No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT49680.10118472485412942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)