FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12545024
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC412030.32844098185862375No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC398080.3173210350175496No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG373180.2974725277528365No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT336740.2684251540690556No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA326030.25988790455881156No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC254630.20297290782385113No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT251540.20050977981389273No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT246930.19683501601910047No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC246160.19622122683862542No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT244300.1947385672598155No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA203650.16233528130356706No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA203420.16215194167823035No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT203110.1619048317484287No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG189380.15096025324463308No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT166260.13253063525426495No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT164940.13147842523059342No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG164390.13104000438739696No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG162780.12975662701003998No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT154270.12297306087258184No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA153280.12218390335482818No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC149770.11938598124642885No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG149690.11932221094196392No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA139850.1114784634927761No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC135830.10827400569341278No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC132440.10557173904171088No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG129090.10290135754224145No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC129030.10285352981389276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)