FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004925872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17211482
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGA1700436298.79661728141714No Hit
NCTTGA342220.19883238410265894No Hit
ATTTGA272130.15810956894937925No Hit
ACTTGC188120.1092991294997142No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)