FastQCFastQC Report
Fri 10 May 2024
EGAF00004925881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13657963
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC573980.42025300551773354No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC510440.37373069468704817No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG393610.2881908524719243No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT342190.250542485727923No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC316230.23153525895479435No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT312280.2286431732169724No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA267250.1956733958058021No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG259690.19013816335569222No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC229240.16784347709830522No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT228650.1674114946716432No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC211700.1550011520751667No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA204320.14959771087386897No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT202200.14804550283230375No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT199770.1462663209733399No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG199660.14618578187684356No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA198020.14498501716544407No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA191760.14040161040119967No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT190120.13920084568980015No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG189470.13872493284686743No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT180090.13185714443654592No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG177280.1297997366078675No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT176310.12908952821149097No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC163040.11937358447961822No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC160330.11738939401139102No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA155660.1139701432783205No Hit
CAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCT154830.11336243918657561No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC139910.10243840900725826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)