FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18052736
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC497500.2755814963449308No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA423750.23472896296716467No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC414730.22973249041031785No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG372220.2061848132050455No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT290110.16070140282337259No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT278400.15421485142196728No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA269040.1490300417620908No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT267890.14839301920772563No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA258870.14339654665087886No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC258310.14308634436353582No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA250700.13887091685160632No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA235140.13025172472471763No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG233200.1291770953721364No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT211730.11728416124846672No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT209800.11621507122244518No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACAC200630.11113550876720295No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG199880.11072005927522566No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA195850.10848771067166771No Hit
CAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGT182640.10117026028630784No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)