FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004925891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3529408
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA42190.11953846084102489No Hit
AGACAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAG41040.1162801240321323No Hit
GACAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGC39050.11064178468457034No Hit
GCCTACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCA37440.1060801131521207No Hit
GTGATGTTATAAGCCTAAGGCAGCTTGACTTGCAGCAACAAGTTTTTTAC35520.10064010734944784No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)