FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13691760
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT736290.5377613980963732No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG420020.3067684505133014No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT324950.2373325270089455No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC323490.23626619222072254No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA293340.21424564847762448No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA256350.1872293992883311No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT246590.18010102426568972No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC227510.16616563538946053No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG215760.15758383144314536No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT212450.15516631901231107No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT204030.14901663482269628No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT198550.14501422753539356No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA197590.14431307589382228No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC190000.13876959572764933No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA187290.13679030307279708No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT182330.13316768625801212No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG171390.12517747900927273No Hit
GACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCT167160.12208802958859927No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA166290.1214526109134253No Hit
CAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGT162840.11893284720152851No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC146340.10688180336202212No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT145240.10607840043938836No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC145130.10599806014712498No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA144460.10550871473061169No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT143320.10467609715624579No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC140130.1023462286806079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)