FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18713252
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAAGACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGC288170.15399247549276845No Hit
GACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGG268310.1433796755368869No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA264690.14144521753888634No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC249870.13352569612165752No Hit
CAGCTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTC240910.1287376453862749No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA234800.12547257953882093No Hit
CACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTG224680.12006464723501827No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT215870.11535675359900033No Hit
CTCAGCTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTT205230.10967094335073348No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC202010.10795023761770535No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT194440.10390497600310197No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA192020.10261177480001872No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)