FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6448864
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC268290.41602676068219147No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC217460.3372066770209451No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT182380.28280949947153483No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT139240.21591399663568653No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA124190.1925765530177098No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG110070.1706812238558605No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT104610.1622146164037573No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC102480.15891170910101374No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT97350.15095681968173No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT92790.14388580686458885No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA90180.13983858242319888No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA89150.13824140189652007No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT81730.1267354994616106No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT79710.12360316483647352No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA77520.12020721789139917No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG77170.11966448664446948No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG77020.11943188753864245No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG76030.11789673344018418No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC74950.11622201987822971No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA73840.11450078649510984No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA67900.1052898619043602No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC66510.10313444352369658No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT65330.10130466389119076No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA64760.10042078728904813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)