FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004925956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565190
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG10140.17940869442134502No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA9820.17374688157964577No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA7870.13924520957554096No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA7170.12685999398432388No Hit
CTCAGGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGGGGT6620.11712875316265328No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG6320.11182080362356023No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG6240.11040535041313541No Hit
GTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATC5880.10403581096622375No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)