FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004925975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5355849
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG77240.14421616442136437No Hit
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC68470.12784154295612143No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA66250.1236965418554556No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA60050.11212041265539786No Hit
CTCAGGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGGGGT59560.11120552502507071No Hit
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA58390.10902099741796306No Hit
GGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCAT58210.1086849162476388No Hit
CTGAGATGTTAGTATTAGTTAGTTTTGTTGTGAGTGTTAGGAAAAGGGCA53880.10060029698372751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)