FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14346742
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA317640.22140218315768134No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC229060.15965994230606503TruSeq Adapter, Index 1 (100% over 50bp)
CTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCA150690.1050342997734259No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)