FastQCFastQC Report
Thu 9 May 2024
EGAF00004925994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5284736
Total Bases533.7 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC242280.45845241843679607No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC214760.40637791556664327No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT192170.3636321662993194No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT146200.27664579649768695No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA143970.27242609659214767No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC112540.21295292707147528No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT101350.19177873785937463No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG88620.16769049579770873No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT85130.16108657083343425No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT83920.15879695788020443No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA82190.1555233790297188No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG80010.15139829122968487No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA78450.1484463935379175No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC68930.13043224864969602No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC67140.12704513527260397No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG66260.12537996221570955No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC63920.12095211567805847No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG63760.12064935694044131No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT62840.11890849419914258No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT61360.11610797587618378No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT59230.11207750018165524No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA58790.11124491365320803No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG55020.10411116089810353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)