FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004926011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004926011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19515113
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG445670.22837172400692737No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA344600.17658109384250043No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC331170.16969924796233565No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC330450.16933030313480635No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG277500.142197485610255No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA268790.1377342780438935No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA252990.12963798877311136No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT249980.12809559442469023No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT231470.11861063781695756No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT227080.11636109921577191No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC217490.11144695908243013No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG205150.105123654677275No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)