FastQCFastQC Report
Thu 9 May 2024
EGAF00004926017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004926017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20253484
Total Bases121.5 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1993583998.43165254926016No Hit
NGCTAC1119380.552685157773349No Hit
GGCTAA390490.19280139653997308No Hit
GGCTAT228980.11305709180701948No Hit
GGCTCC216780.10703343681511784No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)