FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004926019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004926019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27433414
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT2399320.8745976712923882No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG809420.2950489501598306No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC719400.262234951872924No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC670040.2442422951806144No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC540810.1971355078153962No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG342100.12470194194568712No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA296910.10822932938641906No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT281120.10247357474355907No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG275080.10027188012399768No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)