FastQCFastQC Report
Thu 9 May 2024
EGAF00004926029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004926029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20810077
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA657020.31572204177812513No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA394500.18957161955719817No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT365420.17559762032596035No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA241520.11605915730153232No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG240740.11568433889024053No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAACTTATCACCT234480.11267618087141147No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG213040.10237347992513433No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA208570.1002254821065775No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)