FastQCFastQC Report
Wed 8 May 2024
EGAF00004926036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004926036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15629956
Total Bases93.7 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1543955098.78178799735585No Hit
NGCTAC309750.198177141381588No Hit
GGCTAA191050.12223322957531038No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)