FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004926040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004926040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20985246
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGTTCTTGTTTTGCACAGCAGTCAGCCATTTCACCATAGGTTTCAC333830.15907843062692711No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA322060.1534697282080944No Hit
CTTCAAATGGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAG252010.12008913309855887No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG243720.11613873861664524No Hit
CCGGGGCATAAAAGTAAGGATGTCTTCTGGCAATTTCATATAAGTATTTT223200.10636044009205325No Hit
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAA216780.10330114786359904No Hit
CTTCATTGTCATGAAAAGCAGTGCACATCACATCAACCTCTGGTCTCACC211990.1010185918239891No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)