FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004926068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004926068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16877304
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA476560.2823673733672155No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC312370.18508287816584923No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA302590.17928811378878995No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC271640.16094987682866885No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC271320.1607602730862702No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG226360.1341209472792574No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA221750.13138946836532658No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG219710.13018074450753508No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT208490.12353276328968181No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG194360.11516057303939066No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG190690.11298605511875592No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA172230.10204828922913281No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)