FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004926078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004926078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27012508
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC797520.29524100464866126No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC790210.2925348508920386No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG546090.20216190218250008No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG510500.18898652431680907No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT445350.16486806778548665No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA401460.14862003927958115No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC393010.14549185880851936No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT328550.12162883949909428No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG293070.10849418350935797No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA292350.10822764032129115No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA286400.1060249570310169No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC274410.10158627255196001No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)