FastQCFastQC Report
Thu 2 May 2024
EGAF00004939469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004939469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences323655506
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG9615849629.710137543589326No Hit
GTATGTCA7767440723.999099524047647No Hit
ACGACATT7360851522.742858884038263No Hit
TGTCAGAC6695401520.68681476409056No Hit
NACGTCGG9953620.3075374840062199No Hit
NTATGTCA8064720.24917604831354237No Hit
NCGACATT7607720.23505609696008073No Hit
NGTCAGAC6931640.21416722013065337No Hit
ACGACATA3236950.10001220248049789No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)