FastQCFastQC Report
Thu 16 May 2024
EGAF00004939472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004939472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500033521
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGACC13880225827.758590608568422No Hit
TAGCTCTA13305940026.610096005943568No Hit
ATCTCTGT11031383222.06128736717233No Hit
GGAGAGAG10261973120.522570325840213No Hit
NCTAGACC14647540.2929311613090835No Hit
NAGCTCTA14022970.2804405987013819No Hit
NTCTCTGT11610650.2321974330196955No Hit
NGAGAGAG10834210.21666967403171358No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)