FastQCFastQC Report
Thu 2 May 2024
EGAF00004939616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004939616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences299414393
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGACAT8547568528.54762062156444No Hit
CGATCACC8389297728.019019446403163No Hit
TTCAGGTG6589968522.009524772578317No Hit
GATCTTGA5547910418.52920410542856No Hit
NCGGACAT8667180.2894710542522249No Hit
NGATCACC8522890.28465198064142494No Hit
NTCAGGTG6677200.2230086514244491No Hit
NATCTTGA5667190.18927580411940986No Hit
ACGAACAT3778610.1262000120348256No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)