FastQCFastQC Report
Wed 22 Feb 2023
EGAF00004942975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004942975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14049575
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT631160.44923778833167555No Hit
GGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACC457610.3257109200812124No Hit
GCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCT359620.25596503808834076No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT252540.1797492094956609No Hit
GTCCAAGTGGCATAGGGGAGCTTAGGGCTCTGCCCCATGATGTACAGTCC242480.17258885055241885No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT206260.1468087112955374No Hit
GTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACC203800.1450577686513649No Hit
CTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTG199060.1416840011174715No Hit
CACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC193600.13779776256577156No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA189430.1348297012543084No Hit
GTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGT172830.12301439723265652No Hit
GCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGG161530.1149714493143031No Hit
GCTACACAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGA161410.114886037478002No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA150040.10679326598847297No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG145290.1034123808015545No Hit
CAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGA144890.10312767468055083No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC143120.10186785009510964No Hit
CGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCATAG142080.10112761418050013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)