FastQCFastQC Report
Wed 11 May 2022
EGAF00004943399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004943399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37057232
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG5527221.4915361190495826TruSeq Adapter, Index 13 (97% over 38bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1341370.3619725294107234No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCGCGTATG789220.21297327334108496TruSeq Adapter, Index 13 (97% over 38bp)

[OK]Adapter Content

Adapter graph