FastQCFastQC Report
Mon 23 Jan 2023
EGAF00004945113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141874631
Sequences flagged as poor quality0
Sequence length35-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52376053.691713566465593No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGAGCC1587280.11187905750394515No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1537690.10838371801650713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)