FastQCFastQC Report
Thu 9 Feb 2023
EGAF00004945147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95514623
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23161802.4249480626647086No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC2178880.22812004398530683No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG1722450.18033364378143438No Hit
GCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCTC1664510.17426755691638965No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT1183590.12391715140832416No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA1029130.10774580558204161No Hit
GCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTC1012560.10601099268328787No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1003890.1051032782697577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)