FastQCFastQC Report
Fri 10 Feb 2023
EGAF00004945159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98960255
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10332111.0440666305882094No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1972430.19931537161055213No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1926360.19465996727676177No Hit
CGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGG1905150.192516682581305No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG1500700.15164673939047552No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG1485360.15009662212370006No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC1453550.14688220033386132No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC1132060.11439542066661004No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1042630.10535845931278168No Hit
GGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCT993790.10042314462508206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)