FastQCFastQC Report
Fri 10 Feb 2023
EGAF00004945209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101893809
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9556460.9378842634099586No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA2338520.22950560224910233No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG1957580.19211962132066335No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1863720.18290807049916055No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG1762060.1729310168393057No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT1408240.13820663039498307No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC1378780.13531538505936117No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1204200.11818186127481012No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT1143640.11223841872473332No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA1129090.11081046150703817No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT1113930.10932263804172833No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT1025610.10065479051823453No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG1024590.10055468630091158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)