FastQCFastQC Report
Thu 23 Feb 2023
EGAF00004945229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106948177
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3197230.2989513322887215No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA2087210.19516087684224856No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1227480.11477334485093654No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT1156650.10815051106481226No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1146980.10724633482999903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)