FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004945288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135191219
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4855480.35915646266936907No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA2958940.21887072414074468No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT1413350.10454451187395536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)