EGAF00004945330 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004945330
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24035218
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCAC	75243	0.31305312063323076	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	64160	0.2669416187529483	No Hit
CCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATC	54390	0.22629293397713307	No Hit
GTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCA	36819	0.15318770980150875	No Hit
CCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGA	36603	0.15228902854136792	No Hit
CCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCG	35280	0.1467846058230052	No Hit
CCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCA	27705	0.11526835329723241	No Hit
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA	24736	0.1029156465316853	No Hit
CTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGACTA	24537	0.10208769481516665	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCCATAT	24530	44.993217	1
GTCCGAT	3795	39.16901	1
CGGTATA	4090	38.993366	2
TCAATCG	9735	38.856678	8
TTACGAC	3385	38.819363	145
CGGTTCG	6435	38.2647	4
GGTTCGC	6620	38.06191	5
ACGTTCG	5790	36.797592	6
CAATCGG	8930	34.144707	9
TATTCAG	31530	33.199844	5
CCGATTG	2945	33.14177	3
CGCATCC	8390	31.568567	145
GTTCGCC	7975	31.514977	6
ACCCGGG	25205	31.280354	145
TACCTCG	8005	30.360617	9
TCGGATT	7035	29.742935	2
CCATATT	35335	29.734632	2
TTCGCAC	16630	29.650648	8
CTTAGTT	13950	28.553192	145
TACGAGG	2175	28.31973	145