FastQCFastQC Report
Wed 6 Sep 2023
EGAF00004945341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38966179
Sequences flagged as poor quality0
Sequence length35-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGATCTCGCGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCAT1591580.4084516472605641No Hit
ATAGATCTCGATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCC1013450.2600845209893431No Hit
ATAGATCTCGCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCT994200.2551443394026394No Hit
ATAGATCTCGTTTACATAAATATTATACTAGCATTTACCATCTCACTTCT802470.20594013079907064No Hit
ATAGATCTCGCTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC795730.20421042566170008No Hit
ATAGATCTCGGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATT702950.18040003357783682No Hit
ATAGATCTCGAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAG690580.1772254857218615No Hit
ATAGATCTCGGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACT689730.17700734783361746No Hit
ATAGATCTCGAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACC596280.15302501176725591No Hit
ATAGATCTCGCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCA583880.14984276492698964No Hit
ATAGATCTCGCTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC563900.14471524138920575No Hit
ATAGATCTCGCATAAATATTATACTAGCATTTACCATCTCACTTCTAGGA557540.1430830567195208No Hit
ATAGATCTCGCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCAC554430.14228492868135723No Hit
ATAGATCTCGCTACCGTATGGCCCACCATAATTACCCCCATACTCCTTAC519360.13328481604521705No Hit
ATAGATCTCGCATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAA473610.1215438650014927No Hit
ATAGATCTCGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTAT455820.11697836731694941No Hit
ATAGATCTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGG451150.11577989209565556No Hit
ATAGATCTCGCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAAC427220.10963866895956106No Hit
ATAGATCTCGCCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAAT395750.1015624344383369No Hit
ATAGATCTCGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAAT392870.10082333194640408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)