FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004945380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41990254
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1125720.2680907812560505No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG507600.1208851939785837No Hit
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG500330.11915383984102597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)