FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004945381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41990254
Sequences flagged as poor quality0
Sequence length35-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1081170.25748117646537694No Hit
ATAGATCTCGCGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCAT779620.1856668930842857No Hit
ATAGATCTCGGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACT563900.13429306714839115No Hit
ATAGATCTCGATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCC552630.13160911100942613No Hit
ATAGATCTCGAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAG484780.11545059956055517No Hit
ATAGATCTCGCTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC463590.11040419045810011No Hit
ATAGATCTCGCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCA460320.10962543832194965No Hit
ATAGATCTCGCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCA455010.1083608591650815No Hit
ATAGATCTCGCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCT443830.10569833657114816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)