FastQCFastQC Report
Thu 2 May 2024
EGAF00004945397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004945397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386033383
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT10747299627.840337321293273No Hit
CTTGGTAC10076875226.10363674169599No Hit
AAGTTGCA8756861422.684207598698787No Hit
GCACAATG8620446522.330831683538623No Hit
GCACAATA4684190.12134157837846889No Hit
TGCACCGA4591410.11893815929385568No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)